Formal release
MetaPilot v1.0.0 is now available
The first formal MetaPilot release marks a stable milestone for researchers ready to run unified DDA and DIA metaproteomics workflows through the desktop application.
Next-generation metaproteomicsMetaPilot v1.0.0 released
Make metaproteomics more accessible, scalable, and reproducible.
MetaPilot streamlines metaproteomic analysis across peptides, proteins, taxa, and functional pathways so your team can focus on discovery instead of infrastructure.
Preprint online
MetaPilot paper posted on bioRxiv
MetaPilot: genome-aware adaptive search-space refinement for unified DDA and DIA metaproteomics
Cheng, K.; Figeys, D. bioRxiv, 2026. DOI: 10.64898/2026.06.12.728088.
Powerful features for scientific breakthroughs
MetaPilot unifies raw data processing, statistical interpretation, and reporting so your lab can accelerate every stage of the metaproteomics pipeline.
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Flexible Acquisition Support
Validated workflows for both DDA and DIA mass spectrometry acquisition, ensuring reproducible metaproteomic results.
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Peptide-to-Function Pipeline
Integrated processing that connects peptides to proteins, taxa, and functional pathways for richer biological narratives.
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Taxonomic & Functional Context
Comprehensive classification, functional annotation, and differential testing to interpret complex microbial communities.
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Rich Visualisations
Interactive charts, heatmaps, and network plots that help transform datasets into publication-ready insights.
Ready to get started?
Join researchers worldwide who trust MetaPilot for their metaproteomics analysis. Download the desktop application and start exploring your datasets within minutes.